1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtacttgcatctctctctttatatcatttgacataatacttttgaagactaaaatattgttggtcttggaaaataactaaccttttttgtttttggcagTTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGATGTCTACAGCTTCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATAT
species | Arabidopsis thaliana |
transcript | AT5G18500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCTGATAAGTAGTTTTATAACTACTAGAGTTATGGGTACCTTCGG TTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGEST: gi|125315415|gb|EL329500.1|EL329500
genomic: TTGGTGCTGATAAG-AGTTTTATAACTACTAGAGTTATGGGTACCTTCGGgtaagtactt ... tttttggcagTTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAG
EST: CTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTCGG TTACGTAGCTCCAGAGTATGCGAAEST: gi|124758580|gb|EH848710.1|EH848710
genomic: CTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTCGGgtaagtactt ... tttttggcagTTACGTAGCTCCAGAGTATGCGAA
EST: TTATGGGTACCTTCGG TTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGA
genomic: TTATGGGTACCTTCGGgtaagtactt ... tttttggcagTTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGA
aagactaaaatattgttggtcttggaaaataactaaccttttttgtttttggcagTTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGATGTCTACAGCTTCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATAT
aactaac putative branch site (score: 1)
ccttttttgttttt CT-rich tract
taaaatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttgcatctctctctttatatcatttgacataatacttttgaagactaaaatattgttggtcttggaaaataactaaccttttttgtttttggcagTTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGATGTCTACAGCTTCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG