Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagacttctttggtaccttcacctcgactacattcatcgttcttggattgtaatttgattttatgttttctgatttctcgcagGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTCAGCAATCAGATTAGATATCTTTATTACAAAGTTAGATCTAATGGAACACTTGGTTATGGCGGTGTAT

Basic information

species Arabidopsis thaliana
transcript AT5G18480.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124741587|gb|EH832749.1|EH832749
EST:     TTTTGTTCTGCATTTACCGATCCATTCAG                         GGCCGTGAGGGTTCATTAGTGCTGGAGCTCGTTCAGCAATCAGATTAGATA
genomic: TTTTGTTCTGCATTTACCGATCCATTCAGgttaagactt ... tttctcgcagGGCCGTGAGGGTTCATT-GTGCTGGAGCTCGTTCAGCAATCAGATTAGATA
EST: gi|124799735|gb|EH889414.1|EH889414
EST:     TCTTGTTACCTCTTTGTGCACTTTTGTTCTGCATTTACCGATCCATTCAG                         GGCCGTGAGGGTTCATTGTG
genomic: TCTTGTTACCTCTTTGTGCACTTTTGTTCTGCATTTACCGATCCATTCAGgttaagactt ... tttctcgcagGGCCGTGAGGGTTCATTGTG
EST: gi|124947705|gb|EL023525.1|EL023525
EST:     TCTTGTTACCTCTTTGTGCACTTTTGTTCTGCATTTACCGATCCATTCAG                         GGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTCAGCAATCAGATTAGA
genomic: TCTTGTTACCTCTTTGTGCACTTTTGTTCTGCATTTACCGATCCATTCAGgttaagactt ... tttctcgcagGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTCAGCAATCAGATTAGA
EST: gi|164090756|gb|ES038155.1|ES038155
EST:     GCATTTACCGATCCATTCAG                         GGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTCAGCAATCAGATTAGATAT
genomic: GCATTTACCGATCCATTCAGgttaagactt ... tttctcgcagGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTCAGCAATCAGATTAGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattcatcgttcttggattgtaatttgattttatgttttctgatttctcgcagGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTCAGCAATCAGATTAGATATCTTTATTACAAAGTTAGATCTAATGGAACACTTGGTTATGGCGGTGTAT
                                       ttctgat  putative branch site (score: 3)
                                     ttttctgatttctc  CT-rich tract
                  attgtaatttgatttt  TA-rich tract