1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAACT
species | Arabidopsis thaliana |
transcript | AT5G18110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATEST: gi|164029603|gb|ES079651.1|ES079651
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
EST: CAATGCTTCTGACCATCAG GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATEST: gi|116398425|gb|EG441017.1|EG441017
genomic: CAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
EST: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATEST: gi|116398424|gb|EG441016.1|EG441016
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
EST: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG GCAGTGATGGGTTTGAGAGACTCAEST: gi|124804316|gb|EH892195.1|EH892195
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCA
EST: CGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG GCAGTGATGGGTTEST: gi|116398423|gb|EG441015.1|EG441015
genomic: CGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTT
EST: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAG GCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
genomic: TCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaac ... ccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCAT
tctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAACT
tacttac putative branch site (score: 1)
tgttttcctt putative PPT
ttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA