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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaacttcttttagcctttggatatccatatggtccaatgtcacaatatgcaaattgagttgtcgaagtttaagagtaatatcacaaaagcaatcactgtagtttcatgtagttgtcatcagGTACCAAGCATTAGTTCTTAGATTCGTGATGTGCTTTATCGA

Basic information

species Arabidopsis thaliana
transcript AT5G18100.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125199841|gb|EL214795.1|EL214795
EST:     ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAG                         GTACCAAGCATTAGTTCTTAGATTCGTGATGTGCTTTATCGA
genomic: ACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGgtagaaactt ... ttgtcatcagGTACCAAGCATTAGTTCTTAGATTCGTGATGTGCTTTATCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaagagtaatatcacaaaagcaatcactgtagtttcatgtagttgtcatcagGTACCAAGCATTAGTTCTTAGATTCGTGATGTGCTTTATCGA
       agtaatat  TA-rich tract