1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtctttttatatattttaaatagagctttggtttcttgatttcacatatctcacttaaaccggtttcttgatttcacatgcttcttttaaaccggtttcttgattcacatatctctcttaaattggttttgttctcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATATTCGCCGGAAAAGTAACTGATAAATGGAGA
species | Arabidopsis thaliana |
transcript | AT5G17230.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGA TGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGEST: gi|86076710|gb|DR372467.1|DR372467
genomic: TATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGAgtgagtcttt ... tcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGG
EST: GTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGA TGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGEST: gi|124818181|gb|EH903047.1|EH903047
genomic: GTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGAgtgagtcttt ... tcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGG
EST: AGACGTAGGCGAAGA TGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGEST: gi|116476476|gb|EG519068.1|EG519068
genomic: AGACGTAGGCGAAGAgtgagtcttt ... tcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGG
EST: CTTGGTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGA TGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGG
genomic: CTTGGTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGAgtgagtcttt ... tcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGG
aaccggtttcttgattcacatatctctcttaaattggttttgttctcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATATTCGCCGGAAAAGTAACTGATAAATGGAGA
ttctcac putative branch site (score: 2)
ttttgttctc CT-rich tract
tcttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctttttatatattttaaatagagctttggtttcttgatttcacatatctcacttaaaccggtttcttgatttcacatgcttcttttaaaccggtttcttgattcacatatctctcttaaattggttttgttctcactatcagTGCGAGAAGAGGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATATTCGCCGGAAAAGTAACTGATAAATGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA