1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttgtttaaatactgattttcattatttttgcacttttagcataagatgttagatttgtttatatgttatgtctctgaagcgtttgatgatggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAG
species | Arabidopsis thaliana |
transcript | AT5G16150.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAG ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGEST: gi|164028401|gb|ES205992.1|ES205992
genomic: TTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAG
EST: GGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAG ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCEST: gi|163999189|gb|ES179449.1|ES179449
genomic: GGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
EST: GGAATTGGAATCTCATCAGCGATTGTACCACTTTAACATATCTGAG ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCEST: gi|164237903|gb|ES032559.1|ES032559
genomic: GGAATTGGAATCTCATCAGCGATTGTACCACTTT-ACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
EST: GAATTGGAATTGGAATCTCATCATCGATTGTACCACTTTACATATCTGAG ATATCACCAACTGAAATCCEST: gi|124767061|gb|EH857191.1|EH857191
genomic: GAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCC
EST: ATCTCATCAGCGATTGTACCACTTTACATATCTGAG ATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
genomic: ATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaa ... tggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTC
gatgttagatttgtttatatgttatgtctctgaagcgtttgatgatggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAG
gtttgat putative branch site (score: 5)
atttgtttatatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtttaaatactgattttcattatttttgcacttttagcataagatgttagatttgtttatatgttatgtctctgaagcgtttgatgatggttgtcagATATCACCAACTGAAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA