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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcctctttggtttcatccattttcttcaacttgaaaacattcaatgtttacatctttgttgatttgcttcctgttgaacttgttaagGTCACTTGACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACGACGATCTATGGACAAAAACCGCCCAAATGGTGA

Basic information

species Arabidopsis thaliana
transcript AT5G15080.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G15080.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 3'ss of exon 5
-gtgagtcctctttggtttca--tccattttcttca--acttgaaaacattcaatgtttacatctttgt-tgatttgctt---cctgttgaacttgttaagGTCACTTGACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACGACGATCTATGGACAAAAACCGCCCAAATGGTGA
 |  | |    ||      ||  |   ||  |||    | || |    |||     | |   |||| || | |||| |||     | ||  |||| || ||| || |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||| || | || ||  | || |||||||| |||||||||||||||||
tgcaaatgaagttcaaacacagatttgttgcctttggtattttatgcgattttcattatgactcttggtataattttcttgtattttttccactt-ttcagGCCATTTGACATCAAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAAATGGTGA

upper sequence: AT5G15080.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G37580.1 (Glycine max), 3'ss of exon 5
--------gtgagtcctctttggtttcatccattttcttcaacttgaaaacattcaatgtttacatctttgttgatttgcttc-ctgttgaacttgttaagGTCACTTGACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACGACGATCTATGGACAAAAACCGCCCAAATGGTGA
        |  |      | | ||||| || |||    ||| |||   |   ||     |||  |  |||  |  |   |||  ||||  |   || | ||| || ||||||||||| || ||||| ||||||||||| || || |||||||||||| | ||||| ||||||||||| || |||||  | ||||| || ||
atttccatgataactagatatcgtttc-tcaattgatgtcatctttgcatagttttgcatttggagttttaattttgaccttaactgtcaattctgattagGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGACGATCTATCGATAAAAATAGACCAAACGGGGA

upper sequence: AT5G15080.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA18G49060.1 (Glycine max), 3'ss of exon 5
--------gtgagtcctctttggtttcatccattttcttcaactt-gaaaacattcaatgtttacatctttgttgatttgcttcctgttgaacttgttaagGTCACTTGACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACGACGATCTATGGACAAAAACCGCCCAAATGGTGA
           |      | | ||||| |  |||    ||| ||| | | |  ||    ||||   | ||  ||       |  ||||  |   ||   ||| || ||||||||||| || ||||| ||||||||||| || || |||||||||||| | ||||| || |||||||| || || ||  | ||||| || ||
atttccataataactagatatcgtttc-taaattgatgtcatctttgcataattttgcagtttgagttttaattttgaccttaactgtcaattctgaatagGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGGCGATCTATCGATAAGAATAGACCAAACGGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaacattcaatgtttacatctttgttgatttgcttcctgttgaacttgttaagGTCACTTGACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACGACGATCTATGGACAAAAACCGCCCAAATGGTGA
                        tgttgat  putative branch site (score: 4)
          aatgttta  TA-rich tract