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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacaagaaacaagaatcttaaatcatgaattggctctccaccttttgaatcccatcattgttaactgactactttattcttctcttttctgtttgataagGTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G13500.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075298|gb|DR371055.1|DR371055
EST:     ATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAAT                         GTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCG
genomic: ATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATgttagcacaa ... gtttgataagGTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatcccatcattgttaactgactactttattcttctcttttctgtttgataagGTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAG
                 aactgac  putative branch site (score: 2)
                       ctactttattcttctc  CT-rich tract
                        tactttatt  TA-rich tract