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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatgcttaagcctaatttcctatctgattgaatttcttcatcctatagaacttctcatagaaatttggagtcttttcctttgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTCACGCTCGCTGGTTTGACAGTGAAAACTTACCGATACTACGATCCAGCGA

Basic information

species Arabidopsis thaliana
transcript AT5G11520.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501584|gb|HO207124.1|HO207124
EST:     CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAG                         AAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
genomic: CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGgttgatgctt ... tgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
EST: gi|301502006|gb|HO207546.1|HO207546
EST:     CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAG                         AAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
genomic: CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGgttgatgctt ... tgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
EST: gi|301501550|gb|HO207090.1|HO207090
EST:     CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAG                         AAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
genomic: CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGgttgatgctt ... tgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
EST: gi|301501070|gb|HO206610.1|HO206610
EST:     CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAG                         AAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
genomic: CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGgttgatgctt ... tgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
EST: gi|116468511|gb|EG511103.1|EG511103
EST:     CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAG                         AAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC
genomic: CTGGTTCTCTGAGAGTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGgttgatgctt ... tgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatcctatagaacttctcatagaaatttggagtcttttcctttgcttttcagAAAACAATTTACATCACTCAGCCAACATGGGGAAATCATCCAAAGATTTTCACGCTCGCTGGTTTGACAGTGAAAACTTACCGATACTACGATCCAGCGA
                                   tcttttcctttgcttt  CT-rich tract
                     atagaaattt  TA-rich tract