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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgtctgtttttggtcgttatcatcttaaacgtctttgattagggttttgactgaaatcctcggttgtttctggattttgcagaagAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGACA

Basic information

species Arabidopsis thaliana
transcript AT5G11500.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045057|gb|DR340812.1|DR340812
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGG
EST: gi|86045138|gb|DR340893.1|DR340893
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGGAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAG
EST: gi|86045092|gb|DR340847.1|DR340847
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGG
EST: gi|86045107|gb|DR340862.1|DR340862
EST:     AGTGAATGCCGCAAAAAGGGCAGAGAGGGAAACA-CATCTGAGGGAGAAG                         AGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCA
genomic: AGTGAATGCCGCAGAAAGGGCAGAGAGG-AAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagA-AA-CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCA
EST: gi|86045106|gb|DR340861.1|DR340861
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG
EST: gi|86045093|gb|DR340848.1|DR340848
EST:     CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAG                         AAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG
genomic: CAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGgtcagtgtct ... tttgcagaagAA-A--CGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttgattagggttttgactgaaatcctcggttgtttctggattttgcagaagAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGACA
              ttttgac  putative branch site (score: 3)
                                           atttt  TA-rich tract