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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagatttacgattttcatgtgtttcattctcttcgattttgcttctctctctctctctgaatgtatagtcttaaacatgttggtctttgtttgtttcacagTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCC

Basic information

species Arabidopsis thaliana
transcript AT5G10330.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA16G27220.1 (Glycine max), 3'ss of exon 5
gtgaaagatttacgattttcatgtgtttcattctcttcgattttg-cttctctctctctctctgaatgtatagtcttaaacatgttggtctttgtttgtttcacagTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCC
   |  |  ||   |||    | || || | |  ||  | ||| |  || |||   | |  |    |  ||   | ||| ||| |    | || |||      |||||||||| |  || ||||||||||||||||| || |  || |||||||||||  ||| ||| || ||||||||||||||  |||| ||||| || |||||
---attgtcttctcattagtttatgatttacttactgtgttttggatttttcttattatgccgtgttagatgtgcataaccatctg---cattatttaaactgcagTTCCAAGGAGGCCAGATTTCAGCTTGAATGTTGAACAAATTGCTGAAGTTGTTAAACAAGAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCC

upper sequence: AT5G10330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv18s0072g00940.t01 (Vitis vinifera), 3'ss of exon 5
-gtgaaagatttacgattttcatgtgtttcattctcttcgattttgcttctctctctctctctga-atgtatagtcttaaacatgttggtctttgtttgtttcacagTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCC
 |  ||| || | | ||||  ||||  || | |  | |   ||||  || ||      | || || || |||  | | | | || ||  | |            |||| || || ||  | || |||||  ||||| ||||   ||| ||||| ||||| ||    || ||||| ||||||||||||||||||||||||||||| ||
tgctaaaaatctgccattt--atgttctttagttgccttatttttctttgtcaaatcatgtcagacatttatgatgtcataaattttcatat-----gacactgcagTACCGAGGAATTCAGACTTCAGTCTGAATTTAGAGGCCATTGCTGATGTTGTTGAGAAGGAGAAACCAAAATGCATATTCCTAACTTCTCCCAACAACCC

upper sequence: AT5G10330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv06s0004g02170.t01 (Vitis vinifera), 3'ss of exon 3
-gtgaaagatttacgattttcatgtgtttcattctcttcgattttgcttctctctctctctctgaatgtatagtcttaaacatgttggtctttgt-ttgtttcacagTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCC
 |  ||| || | | ||||  ||||  ||  ||  |||  |||||  |  | || |    ||| ||   | | |  |||    ||   | ||  | |        ||| || || ||  | || |||||| |||||||||| | ||  ||||| |||||  |    || ||||| ||||||||||||||||||||||| ||||||||
tgctaaaaatctgccattt--atgttcttatttgcctt--atttttttattgtcacatcatctcaa---acaattgtaatgccgtaaattttcatatcacactgtagTACCGAGGAATTCAGACTTCAGCCTGAATGTAGAACTCACTGCTGATGTTGTTCAGAAGGAGAAACCAAAATGCATATTCCTAACTTCTCCTAACAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctctctgaatgtatagtcttaaacatgttggtctttgtttgtttcacagTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCC
                                     tctttgtttgtttc  CT-rich tract
             aatgtata  TA-rich tract