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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcacggctaaatagctcgttacttctattagcctttttcatacttattgttcaactttattctaacactcaatccatttaaaagTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G10270.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 3'ss of exon 5
--------gtattgcacggctaaatagctcgttactt-ctattagcctttttcatacttattgtt--caactttattctaacactcaatccatttaaaagTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG
         |     | |     || |||| |   || |||  ||    ||    |   | || |  |||  | | |   | |  |    | | ||  ||||||||||||||||| | ||||| || ||||| ||||||||  | |||||||| || || |||||||| ||||
gtaaaaccatccattatgttatgatggctcttggtttgctaggaggtagttcttgatccaatgatggcaagataactggtataacc---tcttgtaccagTGTTACATGAAGCAACTCCTTACAGGCCTTCATTATTGTCACATTAATCAAGTTCTGCATCGTGATATTAAAG

upper sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 5
gtattgcacggctaaatagctcgtta---cttctattagcctttt-tcatacttattgttcaactttattctaacactcaatccatttaaaagTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG
|| |   | | ||| |  |||   ||    || ||||   ||||| |     | |   |||     |  | || |    ||     ||   ||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||||| | || || ||||
gtgtgatatgtctataatgcttagtaagatttttattttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcagTGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctttttcatacttattgttcaactttattctaacactcaatccatttaaaagTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG
                              ttctaac  putative branch site (score: 1)
                                           tccattt  putative PPT
     ttttcatacttatt  TA-rich tract