Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaaaaaacataactcatctctttcaaaatacttatctcagagagatagaaagagagttctcaagcttaatttccttattcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGGTGTTGAATTCATCAGAAAATGAAACTGAGAGATAATCAGAGAGATACAA

Basic information

species Arabidopsis thaliana
transcript AT5G09660.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124794506|gb|EH884185.1|EH884185
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|124774901|gb|EH865030.1|EH865030
EST:     TTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: TTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|125312835|gb|EL326920.1|EL326920
EST:     ACAGGAGCAGAGGAAGNGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGG
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGG
EST: gi|125207638|gb|EL222592.1|EL222592
EST:     AGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: AGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|124854939|gb|EH939376.1|EH939376
EST:     GAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: GAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|125289284|gb|EL303369.1|EL303369
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAG
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAG
EST: gi|125279645|gb|EL293730.1|EL293730
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|125014393|gb|EL086662.1|EL086662
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCA
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGA-GAAAGCAAAAGATGAATTAGCCGGAAGTATTCA
EST: gi|125246415|gb|EL260500.1|EL260500
EST:     GAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: GAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|124787699|gb|EH877378.1|EH877378
EST:     CTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: CTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|125313823|gb|EL327908.1|EL327908
EST:     CAGGAGCTAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTA
genomic: CAGGAGC-AGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTA
EST: gi|124985567|gb|EL058149.1|EL058149
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GNTTGGTCTGGAGAAAGCAAAAG
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAG
EST: gi|124848037|gb|EH932474.1|EH932474
EST:     GTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: GTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|124855760|gb|EH940197.1|EH940197
EST:     AAGTGTATCAGCTTGGACCCCTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: AAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|125268936|gb|EL283021.1|EL283021
EST:     CAGGAGCAGAGGAAGTGTATCTAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: CAGGAGCAGAGGAAGTGTATC-AGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
EST: gi|124718928|gb|EH810330.1|EH810330
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATT
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATT
EST: gi|125140740|gb|EL178812.1|EL178812
EST:     ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTA
genomic: ACAGGAGCAGAGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTA
EST: gi|124897264|gb|EH973478.1|EH973478
EST:     CGAATACGAAAG                         GATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG
genomic: CGAATACGAAAGgtcagaaaaa ... tcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcagagagatagaaagagagttctcaagcttaatttccttattcttatgtagGATTGGTCTGGAGAAAGCAAAAGATGAATTAGCCGGAAGTATTCAGAAAGGTGTTGAATTCATCAGAAAATGAAACTGAGAGATAATCAGAGAGATACAA
                              gcttaat  putative branch site (score: 4)
                                    tttccttattcttat  CT-rich tract
                                ttaatttccttatt  TA-rich tract