1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttagctaactatactctctctatttctagttccatgttcttcaaacaaaatcatagtttctttcttgcttgctttagtttctcctgattagtttcgtgggttttctgcagTATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACACCAAAGAGAGTCCTCTGGAGCTACTCAGAAACTAATCTTCAGCAACCCG
species | Arabidopsis thaliana |
transcript | AT5G07710.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCGTGAATCCAATGAAGGGATTTGTTAACTACCCTAACGCAAGGATACA TATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACAEST: gi|125283203|gb|EL297288.1|EL297288
genomic: GTCGTGAATCCAATGAAGGGATTTGTTAACTACCCTAACGCAAGGATACAgtgagttagc ... ttttctgcagTATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACA
EST: ATTTGTTAACTACCCTAACGCAAGGATACA TATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACA
genomic: ATTTGTTAACTACCCTAACGCAAGGATACAgtgagttagc ... ttttctgcagTATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACA
gtttctttcttgcttgctttagtttctcctgattagtttcgtgggttttctgcagTATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACACCAAAGAGAGTCCTCTGGAGCTACTCAGAAACTAATCTTCAGCAACCCG
tcctgat putative branch site (score: 3)
ttttctgc putative PPT
tttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttagctaactatactctctctatttctagttccatgttcttcaaacaaaatcatagtttctttcttgcttgctttagtttctcctgattagtttcgtgggttttctgcagTATTGCGACAGAGATAAATGGAGATGAAGCTCGGTATGCAACAGAGATACACCAAAGAGAGTCCTCTGGAGCTACTCAGAAACTAATCTTCAGCAACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT