1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaatctctctctctgcttttgtattccttcagtgtttgaactctaacaaatgggcaaagcttaaattcaagccctgtccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAA
species | Arabidopsis thaliana |
transcript | AT5G06360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAAGATGAAATGTTTAGAGTGATACGATCTGGAAAEST: gi|86050587|gb|DR346342.1|DR346342
genomic: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAA-GATGAAATGTTTAGAGTGATCCGATCTGGAAA
EST: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGEST: gi|164175091|gb|ES188430.1|ES188430
genomic: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGG
EST: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAGATGAAATEST: gi|86050595|gb|DR346350.1|DR346350
genomic: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAAT
EST: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAEST: gi|86050588|gb|DR346343.1|DR346343
genomic: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAA
EST: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAEST: gi|163988744|gb|ES117307.1|ES117307
genomic: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAA
EST: TGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAEST: gi|86050593|gb|DR346348.1|DR346348
genomic: TGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAA
EST: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAG GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAEST: gi|86072911|gb|DR368668.1|DR368668
genomic: AACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAAAGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAA
EST: ACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAANNN NTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAA
genomic: ACAAAAGAGGAAAGAGAAAGCTGGCAAATGGGAGGTCCCTCTTCCAA-AGgtgaaatctc ... ccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAA
tgtttgaactctaacaaatgggcaaagcttaaattcaagccctgtccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAA
ctctaac putative branch site (score: 2)
ccctgtccttttac putative PPT
ttaaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatctctctctctgcttttgtattccttcagtgtttgaactctaacaaatgggcaaagcttaaattcaagccctgtccttttacagGTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA