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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgtgttaagcttgatccttctcttcgttagtttctatgtgattggtttcagtcatttactttttgaaatctttatgcagTGAAGTTGTGAAAACCAACACTCTAGGTCTCATGTTATGTTGCCGAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G04900.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124738430|gb|EH829710.1|EH829710
EST:     AATGCATATAGCTTTAAACCTTTGGCAGAGGCCTCAGATGAGGATCTTAT                         TGAAGTTGTGAAAACCAACACTC
genomic: AATGCATATAGCTTTAAACCTTTGGCAGAGGCCTCAGATGAGGATCTTATgtaagtcttg ... ctttatgcagTGAAGTTGTGAAAACCAACACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttagtttctatgtgattggtttcagtcatttactttttgaaatctttatgcagTGAAGTTGTGAAAACCAACACTCTAGGTCTCATGTTATGTTGCCGAGAG
                                            tctttat  CT-rich tract
                             atttactttttgaaat  TA-rich tract