1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgcctacagttttctttatctctttaccgtaatcacattcacattcaaagaggcttgcatgcagctgtttttttttttttgaacattgcctttggttgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG
species | Arabidopsis thaliana |
transcript | AT5G04740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAATCATCAACAATCTCTTGAAATACCATCCG GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCEST: gi|116403963|gb|EG446555.1|EG446555
genomic: ACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctac ... tgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
EST: TGGAACAAATCCGATTAACAATCATCAACAATCTCTTGAAATACCATCCG GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCEST: gi|86082088|gb|DR377847.1|DR377847
genomic: TGGAACAAATCCGATTAACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctac ... tgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
EST: ACAATCATCAACAATCTCTTGAAATACCATCCG GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
genomic: ACAATCATCAACAATCTCTTGAAATACCATCCGgtctgcctac ... tgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCC
ggcttgcatgcagctgtttttttttttttgaacattgcctttggttgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG
ttgtttt CT-rich tract
tgtttttttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcctacagttttctttatctctttaccgtaatcacattcacattcaaagaggcttgcatgcagctgtttttttttttttgaacattgcctttggttgttttgcagGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG