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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccttttcctctaagatatttattaggttccttcaaatcgagtaacatactagcagcactattgtcctgaaaattgttgaataaagaggacttgcatttaaccttccataacttttttgctttgagctgatgatgtccttgaaccgtctgagcctttttgtaaaaattcttcctaaaaatgtgttgtttcaatagGTTGGTTCAGATTCATGTCAAGGTGCTGGGGCGCCCACTATGTTTCAAGCAATGAGACGGATTGTGAGTTCCCTAGGAAATAAGCAGGTCACTGAGTGTA

Basic information

species Arabidopsis thaliana
transcript AT5G04710.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125176507|gb|EL195808.1|EL195808
EST:     TGTCGACTGAACATGATATCCGGATGATAGCTTTATTTGACAACGAGGAG                         GTTGGTTCAGATTCATGTCAAGGT
genomic: TGTCGACTGAACATGATATCCGGATGATAGCTTTATTTGACAACGAGGAGgtaccctttt ... gtttcaatagGTTGGTTCAGATTCATGTCAAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaccgtctgagcctttttgtaaaaattcttcctaaaaatgtgttgtttcaatagGTTGGTTCAGATTCATGTCAAGGTGCTGGGGCGCCCACTATGTTTCAAGCAATGAGACGGATTGTGAGTTCCCTAGGAAATAAGCAGGTCACTGAGTGTA
                              tcctaaa  putative branch site (score: 2)
                                           ttgtttc  putative PPT
              tttttgtaaaaattct  TA-rich tract