1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctctagtgtttccagaagagaacatgcatgacctattttgagaattgttcttttcaagtagttgtggatcttaatgtatctatgtcctgaatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGAGCGAAGACAACTTAATAAG
species | Arabidopsis thaliana |
transcript | AT5G04600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCT GTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCEST: gi|125005525|gb|EL077794.1|EL077794
genomic: CACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCTgtgagtgatt ... aatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTC
EST: ATTGAACCAGAAGAATGTTAAACCCAATCT GTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGAEST: gi|86074844|gb|DR370601.1|DR370601
genomic: ATTGAACCAG-AGAATGTTAAACCCAATCTgtgagtgatt ... aatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGA
EST: CACATGCTTAAAGTCCATGTCATTGAMCC--AGAATGTTAAACCCAATCT GTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGA
genomic: CACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCTgtgagtgatt ... aatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGA
ttgttcttttcaagtagttgtggatcttaatgtatctatgtcctgaatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGAGCGAAGACAACTTAATAAG
tcttaat putative branch site (score: 3)
ttaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctagtgtttccagaagagaacatgcatgacctattttgagaattgttcttttcaagtagttgtggatcttaatgtatctatgtcctgaatgttatagGTGGAGAGGGTTTAAATGTAACTTCAAACCAGTGGATTCGGTTCAGATTGAGCGAAGACAACTTAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - gagaaca