1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagatctctctgtgcacttatctaatcttgtgccattacaggcatttgatattgatgtgcaaaacttcttccttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAAACGGCTGTGCAAGACCGTACATGGCTGAGCTCGGTCTAGTCGGGGATG
species | Arabidopsis thaliana |
transcript | AT5G04590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAEST: gi|125069959|gb|EL135549.1|EL135549
genomic: GCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCA
EST: GAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAEST: gi|124740977|gb|EH832139.1|EH832139
genomic: GAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCA
EST: CGGGTATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGEST: gi|124842415|gb|EH926852.1|EH926852
genomic: CGGG-ATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAG
EST: CGGGNTCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGEST: gi|125282380|gb|EL296465.1|EL296465
genomic: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAG
EST: AGCGCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAEST: gi|125242376|gb|EL256461.1|EL256461
genomic: AGCGCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCA
EST: ATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGEST: gi|124750530|gb|EH840660.1|EH840660
genomic: ATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAG
EST: ATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAEST: gi|124852161|gb|EH936598.1|EH936598
genomic: ATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCA
EST: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGNAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGEST: gi|164174004|gb|ES163418.1|ES163418
genomic: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAG
EST: GCGCGGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTEST: gi|124759067|gb|EH849197.1|EH849197
genomic: GCGC-GGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTT
EST: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCGEST: gi|125146598|gb|EL181243.1|EL181243
genomic: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCA
EST: ATCCCCAGCACTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGEST: gi|125005567|gb|EL077836.1|EL077836
genomic: ATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAG
EST: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGEST: gi|125289346|gb|EL303431.1|EL303431
genomic: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTG
EST: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAG GTTGGTCTGGACTACGACGAGTCTGTTGTGATAAG
genomic: CGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAAGgtaagatctc ... cttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAG
cttgtgccattacaggcatttgatattgatgtgcaaaacttcttccttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAAACGGCTGTGCAAGACCGTACATGGCTGAGCTCGGTCTAGTCGGGGATG
tattgat putative branch site (score: 3)
cttcttccttgtatc putative PPT
atttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatctctctgtgcacttatctaatcttgtgccattacaggcatttgatattgatgtgcaaaacttcttccttgtatcagGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAAACGGCTGTGCAAGACCGTACATGGCTGAGCTCGGTCTAGTCGGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA