1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgactctgatctcacagatctcatccctagttattttggttgattagagtctcaatcccaagttatttccttgtcccttgtatttctcctatttttatacttgattattttgacaatctttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG
species | Arabidopsis thaliana |
transcript | AT4G39460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037537|gb|DR333292.1|DR333292
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037535|gb|DR333290.1|DR333290
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|152038462|gb|AV823633.2|AV823633
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037532|gb|DR333287.1|DR333287
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAEST: gi|86037538|gb|DR333293.1|DR333293
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGA
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037548|gb|DR333303.1|DR333303
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037533|gb|DR333288.1|DR333288
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTSTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037553|gb|DR333308.1|DR333308
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|124927607|gb|EL005330.1|EL005330
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGEST: gi|86037534|gb|DR333289.1|DR333289
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAG
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037555|gb|DR333310.1|DR333310
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037540|gb|DR333295.1|DR333295
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037541|gb|DR333296.1|DR333296
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037546|gb|DR333301.1|DR333301
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAARAGCAGAAACTGCEST: gi|86037536|gb|DR333291.1|DR333291
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAA-AGCAGAAACTGC
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCEST: gi|86037551|gb|DR333306.1|DR333306
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGC
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTEST: gi|86037554|gb|DR333309.1|DR333309
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTAAC GGCTTCGGCTTTATTTGEST: gi|86037544|gb|DR333299.1|DR333299
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTG
EST: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACC GGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
genomic: TTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCgtaagtgact ... ttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCT
cccttgtatttctcctatttttatacttgattattttgacaatctttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG
ttttgac putative branch site (score: 3)
tctttctttat putative PPT
tatttttatacttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactctgatctcacagatctcatccctagttattttggttgattagagtctcaatcccaagttatttccttgtcccttgtatttctcctatttttatacttgattattttgacaatctttctttatagGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA