1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgatatattttcacactttgtttttatagaatacatgattcgtggttttgaatcgtccaagtgattattttgcagGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTATGATGAGTATGTTCCAATGGTTGACAAAGCTGTTGACGCCACCTGGAAGG
species | Arabidopsis thaliana |
transcript | AT4G39170.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGTAAAGAGTTATTCCCATCTCCGCTTGACCCCTGTTCGTGAAGAG GCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTATEST: gi|164085206|gb|ES205654.1|ES205654
genomic: GCAGTAAAGAGTTATTCCCATCTCCGCTTGACCCCTGTTCGTGAAGAGgtatgatata ... tattttgcagGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTAT
EST: AAGCAGTAAAGAGTTATTCCCATCTCCGCTTGACCCCTGTTCGTGAAGAG GCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGEST: gi|164216106|gb|ES055313.1|ES055313
genomic: AAGCAGTAAAGAGTTATTCCCATCTCCGCTTGACCCCTGTTCGTGAAGAGgtatgatata ... tattttgcagGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAG
EST: CTCCGCTTGACCCCTGTTCGTGAAGAG GCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTAT
genomic: CTCCGCTTGACCCCTGTTCGTGAAGAGgtatgatata ... tattttgcagGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTAT
tttttatagaatacatgattcgtggttttgaatcgtccaagtgattattttgcagGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTATGATGAGTATGTTCCAATGGTTGACAAAGCTGTTGACGCCACCTGGAAGG
ttatttt CT-rich tract
tgattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatatattttcacactttgtttttatagaatacatgattcgtggttttgaatcgtccaagtgattattttgcagGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTATGATGAGTATGTTCCAATGGTTGACAAAGCTGTTGACGCCACCTGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG