1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtttcttgaatcttcctctcttctttagttttctgctcctcttgtctccactttgatgcttaattgaacgcatttgtaaatcaatgtaatcttgcatagtcattattattcaacacactgcgaggtaaatttctttgatttgcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG
species | Arabidopsis thaliana |
transcript | AT4G38510.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAG GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGNGNAATTTEST: gi|125015941|gb|EL088210.1|EL088210
genomic: CCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGgtttcttgaa ... gcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTT
EST: TTGATGGAGAGAAAGCTGTTGTTCAG GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTEST: gi|86066806|gb|DR362563.1|DR362563
genomic: TTGATGGAGAGAAAGCTGTTGTTCAGgtttcttgaa ... gcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTT
EST: CCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAG GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGNGCAATTTEST: gi|125018910|gb|EL091179.1|EL091179
genomic: CCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGgtttcttgaa ... gcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTT
EST: CAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAG GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTEST: gi|86066801|gb|DR362558.1|DR362558
genomic: CAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGgtttcttgaa ... gcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTT
EST: CCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAG GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTT
genomic: CCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGgtttcttgaa ... gcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTT
tagtcattattattcaacacactgcgaggtaaatttctttgatttgcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG
ctttgat putative branch site (score: 5)
tttgctt CT-rich tract
taaatttctttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcttgaatcttcctctcttctttagttttctgctcctcttgtctccactttgatgcttaattgaacgcatttgtaaatcaatgtaatcttgcatagtcattattattcaacacactgcgaggtaaatttctttgatttgcttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA