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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacaatgtattattcttagttggttctcatcttctacttaacttttcagtgacaattacttattcattttctttttttcctgttaagGATCTTTGCCAGGCTGATTCAAAGTCATTTACCACTCAGTGGGTGACTCTCTTTCCAACAAGTGATGTACTCAAGCCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G38120.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164132722|gb|ES116701.1|ES116701
EST:     TTTTGTCCCAAAGCTCCAAGGTTAGAATAGCTGCAATTGTTTGCATACAG                         GATCTTTGCCAGGCTGATTCAAAGTCATTTACCACTCAGTGGGTGACT
genomic: TTTTG-CCCAAAGCTCCAAGGTTAGAATAGCTGCAATTGTTTGCATACAGgtgagtaaca ... tcctgttaagGATCTTTGCCAGGCTGATTCAAAGTCATTTACCACTCAGTGGGTGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacttaacttttcagtgacaattacttattcattttctttttttcctgttaagGATCTTTGCCAGGCTGATTCAAAGTCATTTACCACTCAGTGGGTGACTCTCTTTCCAACAAGTGATGTACTCAAGCCAAG
   acttaac  putative branch site (score: 3)
                       ttacttattcattttc  putative PPT
                   acaattacttattcat  TA-rich tract