Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctttcttcttttgtgtatttcctgattctttactagtcatgtaaattgagtttactctatactatagatatttatgtgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAG

Basic information

species Arabidopsis thaliana
transcript AT4G37040.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37040.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA01G39200.1 (Glycine max), 3'ss of exon 5
gtaaacctttcttcttttgtgtat--ttcctgattc--tttactagt-catgtaaatt--gagtttactctatactatagatatttatgt---gggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAG
  |    ||||  | ||||| | |  || |  |||   | || ||||   | ||||||   || ||    |    ||  || |||||  |    |  ||||||| |||||||| || || |||||||||||||  |||||| ||||||| ||  | |||||||| |||||  ||
--agttgtttccccatttgtatttggtttccaattacatctattagtatttctaaattttaagctttaatttggttaatgaaatttaaatttatgattgcagGGCTATCATGGGGACACATCAGCAACTTTCTATTGTGGAGATGTTGATGATGAAGCTAAAAAACTAGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125282243|gb|EL296328.1|EL296328
EST:     GATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAAT                         GGTTATCATGGTGATACTTCAGCAACTTTCTT
genomic: GATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAATgtaaaccttt ... tgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTT
EST: gi|124723486|gb|EH814888.1|EH814888
EST:     GGATATTATCAACATCGATGTCACAGTTTATTTGAAT                         GGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAG
genomic: GGATATTATCAACATCGATGTCACAGTTTATTTGAATgtaaaccttt ... tgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAG
EST: gi|125020983|gb|EL093252.1|EL093252
EST:     CACTTGAGGATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAAT                         GGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAAT
genomic: CACTTGAGGATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAATgtaaaccttt ... tgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAAT
EST: gi|86077188|gb|DR372945.1|DR372945
EST:     GATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAAT                         GGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAG
genomic: GATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAATgtaaaccttt ... tgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAG
EST: gi|124816127|gb|EH900993.1|EH900993
EST:     ATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAAT                         GGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAG
genomic: ATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAATgtaaaccttt ... tgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagtcatgtaaattgagtttactctatactatagatatttatgtgggatgcagGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAG
                          tatactatagatattt  TA-rich tract