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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgaatgtcttctttgaagctctttttgacattccacaaggaagtctgaaacaagttcttccacttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAGTCACGGGAGTTGCACTTCTGAACTCTGCGGGACAATTTGCAGCCGAGAGT

Basic information

species Arabidopsis thaliana
transcript AT4G36530.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125010335|gb|EL082604.1|EL082604
EST:     GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAG                         CCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCC
genomic: GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCC
EST: gi|125211016|gb|EL225970.1|EL225970
EST:     GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAG                         CCTTGGGGGATTTACGGCATTGTCAGTTG
genomic: GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTG
EST: gi|125117860|gb|EL166816.1|EL166816
EST:     GCTGTTGTCGTTGGAAACAG                         CCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAGT
genomic: GCTGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAGT
EST: gi|125009045|gb|EL081314.1|EL081314
EST:     GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAG                         CCTTGGGG-ATTTACGGCATTGTCAGTTGCGGTTGGATTACCC
genomic: GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCC
EST: gi|124867146|gb|EH951583.1|EH951583
EST:     TTTCATGAAAGAGGTAGTGAAAGAACCAGCTTGTTGTCGTTGGAAACAG                         CCTTGGGGGATTTACGGCATTGTTCAGTTGCGGTTGGATTACCCGAGCAAG
genomic: TTTCATGAAAGAGGTAGTGAAAGAACCAGC-TGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTG-TCAGTTGCGGTTGGATTACCCGAGCAAG
EST: gi|124754444|gb|EH844574.1|EH844574
EST:     GTGAAAGAACCAGCTGTTGTCGTTGGAAACAG                         CCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAG
genomic: GTGAAAGAACCAGCTGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAG
EST: gi|124902283|gb|EH976363.1|EH976363
EST:     GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAG                         CCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGG
genomic: GATTTCATGAAAGAGGTAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGgtaaatgaat ... ttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttttgacattccacaaggaagtctgaaacaagttcttccacttctttacagCCTTGGGGGATTTACGGCATTGTCAGTTGCGGTTGGATTACCCGAGCAAGTCACGGGAGTTGCACTTCTGAACTCTGCGGGACAATTTGCAGCCGAGAGT
    ttttgac  putative branch site (score: 3)
                                    ttcttccacttcttta  putative PPT
                                             ttcttta  TA-rich tract