1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtgtgttttatcttcttctcatatttcaaaggctttcacagaataatcttcttcttatgatgtttattgttctctccttacagCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCATGACGATAAAGTATAACATC
species | Arabidopsis thaliana |
transcript | AT4G36410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAG CAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGAEST: gi|86046992|gb|DR342747.1|DR342747
genomic: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGgtttgtgtgt ... ctccttacagCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGA
EST: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAG CAAAAGCCGAAAGACAATGACCATEST: gi|86046995|gb|DR342750.1|DR342750
genomic: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGgtttgtgtgt ... ctccttacagCAAAAGCCGAAAGACAATGACCAT
EST: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAG CAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGEST: gi|86081006|gb|DR376763.1|DR376763
genomic: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGgtttgtgtgt ... ctccttacagCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAG
EST: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAG CAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGA
genomic: GTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGgtttgtgtgt ... ctccttacagCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGA
aaggctttcacagaataatcttcttcttatgatgtttattgttctctccttacagCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCATGACGATAAAGTATAACATC
tttattgttctctcct CT-rich tract
ttatgatgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtgttttatcttcttctcatatttcaaaggctttcacagaataatcttcttcttatgatgtttattgttctctccttacagCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCATGACGATAAAGTATAACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA