1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttcatatttccctatgctactagattattgtgacatatcataattttgcagtttggagaacgaaatattggttgtatttcctctccctccttcatctggaaatctccttgctctgagttttcccgtttttgagggccacgtttttcgctgatgggaacagttttgtggaaatcaatgtaacagCGGTTAGCAGTGGAAGTCTTGGTTGCTGGTGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAG
species | Arabidopsis thaliana |
transcript | AT4G36210.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGA CGGTTAGCAGTGGAAGTCTTGGTTGCTEST: gi|125268824|gb|EL282909.1|EL282909
genomic: ACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGAgtaagttcat ... aatgtaacagCGGTTAGCAGTGGAAGTCTTGGTTGCT
EST: ACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGA CGGTTAGCAGTGGAAGTCTTGGTTG
genomic: ACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATCAAGGAgtaagttcat ... aatgtaacagCGGTTAGCAGTGGAAGTCTTGGTTG
ttgagggccacgtttttcgctgatgggaacagttttgtggaaatcaatgtaacagCGGTTAGCAGTGGAAGTCTTGGTTGCTGGTGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAG
cgctgat putative branch site (score: 4)
aaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcatatttccctatgctactagattattgtgacatatcataattttgcagtttggagaacgaaatattggttgtatttcctctccctccttcatctggaaatctccttgctctgagttttcccgtttttgagggccacgtttttcgctgatgggaacagttttgtggaaatcaatgtaacagCGGTTAGCAGTGGAAGTCTTGGTTGCTGGTGTTGTTTTTGAAGAAGAAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA