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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcaaacaaaatatctgatctcatgttcttgcattttctcaattaatagctctaaaaaaaaactcttcttttgtcaatgcagCCGCATTTCAGGCGTCCTCTGTTTAAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTATTTCTTCTATATCTTAA

Basic information

species Arabidopsis thaliana
transcript AT4G34360.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34360.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os11g35340.1 (Oryza sativa), 3'ss of exon 5
-----gtcttcaaacaaa-atatctgatctcatgttcttgc--attttctcaattaatagctctaaaaaaaaactcttcttttgtcaat-------gcagCCGCATTTCAGGCGTCCTCTGTTTAAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTATTTCTTCTATATCTTAA
      |  |  ||| ||  || || | ||||  || | ||  |||   |||  ||||           || | |||  || | | |         |||||| |||||| | ||||   | ||| | |  |||  |||||| |||||  | ||||  | ||| ||||| ||||||||||||||||||||||||||  | |
agaggattatggaactaatgtaacttacctcactttatggcttattcgttcatctaatcttctctttctaatattctgtttatctaatcttatctggcagCCACATTTCCGTCGTCGATTTTTTGAAGCACCTGGGTTTACATGGTCTGTTGAGTGGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcattttctcaattaatagctctaaaaaaaaactcttcttttgtcaatgcagCCGCATTTCAGGCGTCCTCTGTTTAAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTATTTCTTCTATATCTTAA
                      ctctaaa  putative branch site (score: 3)
                                   ctcttcttttgtc  putative PPT
             aattaatagctctaaa  TA-rich tract