1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttaagatttgtgaatatgttgcaatgccaatttggatatttcatgagactaatctgacgagcatggatttaacggaagttggctcatttgttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGCTTGCGAAGGACATTGACGGGTCCCTGGTAGAGCTTATAATGGCGTCTAA
species | Arabidopsis thaliana |
transcript | AT4G34000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGAAATCATGGAAAAGCAGAAAAATCAG CTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGCEST: gi|116421675|gb|EG464267.1|EG464267
genomic: GTTGAAATCATGGAAAAGCAGAAAAATCAGgtactgtctt ... gttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGC
EST: GTTGAAATCATGGAAAAGCAGAAAAATCAG CTTCTGGAGCCTCTGCGTCAGCCATGGGGAATGGGATGCAAAAGGCAATGCEST: gi|116484744|gb|EG527336.1|EG527336
genomic: GTTGAAATCATGGAAAAGCAGAAAAATCAGgtactgtctt ... gttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGC
EST: GTTGAAATCATGGAAAAGCAGAAAAATCAG CTTCTGGAGCCTTTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGCEST: gi|116458117|gb|EG500709.1|EG500709
genomic: GTTGAAATCATGGAAAAGCAGAAAAATCAGgtactgtctt ... gttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGC
EST: GTTGAAATCATGGAAAAGCAGAAAAATCAG CTTCTGGAGCCTTTGCCCCAGCCATGGGGAATGGGATGCAAAAGGCAATGC
genomic: GTTGAAATCATGGAAAAGCAGAAAAATCAGgtactgtctt ... gttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGC
gagactaatctgacgagcatggatttaacggaagttggctcatttgttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGCTTGCGAAGGACATTGACGGGTCCCTGGTAGAGCTTATAATGGCGTCTAA
atttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaagatttgtgaatatgttgcaatgccaatttggatatttcatgagactaatctgacgagcatggatttaacggaagttggctcatttgttgttgcagCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAGGCAATGCTTGCGAAGGACATTGACGGGTCCCTGGTAGAGCTTATAATGGCGTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -gatttgt
- - - - - - - - - - - - - - -aatttgg
- - - - - - - - - - - - - - - - - - - - - - - agactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacggaa