1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtttgcttgctttgtttaggacgtatatgtatgcctttgttgctcagtatttattgcttctcaaaattttattctgctgtatgtcaaattctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGATGCTGAGTGCATTAGAGCCCGGAAACAAGGAG
species | Arabidopsis thaliana |
transcript | AT4G32760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG TTTGTCGGAGATTCAAAATGCAAAAGGEST: gi|163968314|gb|EL986043.1|EL986043
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGG
EST: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG TTTGTCGGAGATTCAAAATGCAAAAGGEST: gi|47828022|gb|CK117706.1|CK117706
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGG
EST: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG TTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGATEST: gi|86063775|gb|DR359532.1|DR359532
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT
EST: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAG TTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT
genomic: GGTAATGATGTGCCTGAACCTTCAGCAGAGCCAGAATTTCCGACTCTAAGgtagatatct ... tctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGAT
cagtatttattgcttctcaaaattttattctgctgtatgtcaaattctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGATGCTGAGTGCATTAGAGCCCGGAAACAAGGAG
ttctttttc CT-rich tract
ttctcaaaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgcttgctttgtttaggacgtatatgtatgcctttgttgctcagtatttattgcttctcaaaattttattctgctgtatgtcaaattctttttcagTTTGTCGGAGATTCAAAATGCAAAAGGTATCATGGATGTGCTTGCGGAGATGCTGAGTGCATTAGAGCCCGGAAACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG