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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttggacatttattaatctcagccaagttaacactaggagtagcaaaatttttatatgttgacctcagttttctttctttttgttcagTAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAGATACAGTAGCAGTGACAAGATCTCACAGCAGAAATCG

Basic information

species Arabidopsis thaliana
transcript AT4G32630.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426688|gb|EG469280.1|EG469280
EST:     ATTTATTTTAAAGAATGGGATGCTCACCGTGATGGTTACCCCGATCGCAG                         TAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAG
genomic: ATTTATTTTAAAGAATGGGATGCTCACCGTGATGGTTACCCCGATCGCAGgttcttggac ... ttttgttcagTAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaggagtagcaaaatttttatatgttgacctcagttttctttctttttgttcagTAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAGATACAGTAGCAGTGACAAGATCTCACAGCAGAAATCG
                       tgttgac  putative branch site (score: 3)
                             cctcagttttctttct  CT-rich tract
           aaaatttttatatgtt  TA-rich tract