1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttctttcacctttatatttaccatctcgtctttcttgtggaaagctggggcctttcttcatttgcctctcatttttgcgtttatgttgataaaataacttgatggtttcttagTAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAG
species | Arabidopsis thaliana |
transcript | AT4G32330.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAGATGATACTCAGTCTTCTAA TAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAAEST: gi|124786530|gb|EH876209.1|EH876209
genomic: TGAAGATGATACTCAGTCTTCTAAgtatttcttt ... ggtttcttagTAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAA
EST: CAAAAGAAACAAGCCCATGAGACATCTGAAGATGATACTCAGTCTTCTAA TAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTG
genomic: CAAAAGAAACAAGCCCATGAGACATCTGAAGATGATACTCAGTCTTCTAAgtatttcttt ... ggtttcttagTAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTG
catttgcctctcatttttgcgtttatgttgataaaataacttgatggtttcttagTAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAG
tttctt CT-rich tract
tttatgttgataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctttcacctttatatttaccatctcgtctttcttgtggaaagctggggcctttcttcatttgcctctcatttttgcgtttatgttgataaaataacttgatggtttcttagTAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA