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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactatttctctttttactatattgaagctgtgggattttaggacccaaaatatttcttatggatttcaaataataatttgcctcgttacttgtttggattctctcatttcagACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACCTAATGCGTTTTAGCTACGGAAGCCAAGGGAGTA

Basic information

species Arabidopsis thaliana
transcript AT4G30890.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30890.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G01430.1 (Glycine max), 3'ss of exon 5
gtaaactatttctctttttact-atattgaagctgtgggattttaggacccaaaatatttcttatggatttcaaataataatttgcctcgttacttgtttggattctctcatttcagACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACCTAATGCGTTTTAGCTACGGAAGCCAAGGGAGTA
 | ||||    || || |     ||| |||     |  | ||          | ||  ||  ||   | | | | ||| |           ||||  |||  | | |    |||||| ||||||| |||| ||| || || ||  |  | |||  || |||  | || ||||||||| ||||||| ||||||||| ||||||||||||| || || |
-ttaactcggccttttgtagtggatagtgatctcctttggttgctatggaggatatgctttctacc-actgctattaaaa-----------tactgatttaaaattt----tttcagGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAATAATGATATTGCACCTTATGCGTTTTGGCTACGGAAGCCAGGGTAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428899|gb|EG471491.1|EG471491
EST:     TTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAG                         ACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAG
genomic: TTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAGgtaaactatt ... ctcatttcagACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggatttcaaataataatttgcctcgttacttgtttggattctctcatttcagACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACCTAATGCGTTTTAGCTACGGAAGCCAAGGGAGTA
                                         ttctctcatttc  CT-rich tract
     atttcaaataataatt  TA-rich tract