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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattctgtctcttttcaaagagtctatgcttgagaaggtgagtgttgatgggactgttttgtttacgcagGTTTACTTTGAGTCGGATGATGTTCTTGCTTGCATTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGATAGTTTGTGGATTAT

Basic information

species Arabidopsis thaliana
transcript AT4G29220.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060995|gb|DR356752.1|DR356752
EST:     CTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGGACCACGTCAAAGG                         GTTTACTTTGAGTCGGATGATGTTCTTGCTTGCATTGTTACATGTGGCGGT
genomic: CTGATAGTCCTAGGGGAACGCATTTCCGTCGTGCAGGACCACGTCAAAGGgtagattctg ... gtttacgcagGTTTACTTTGAGTCGGATGATGTTCTTGCTTGCATTGTTACATGTGGCGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagagtctatgcttgagaaggtgagtgttgatgggactgttttgtttacgcagGTTTACTTTGAGTCGGATGATGTTCTTGCTTGCATTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGATAGTTTGTGGATTAT
                           tgttgat  putative branch site (score: 4)
                                         ttttgttt  putative PPT
                                         ttttgttta  TA-rich tract