1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtagtataaagttttgttctctccatgttaagtaatatttgattgatgtgattatatataaagtatttatgactttttgcaactgttgcactgttgcagGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT
species | Arabidopsis thaliana |
transcript | AT4G29100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAG GCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACEST: gi|47832050|gb|CK121734.1|CK121734
genomic: TCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGgtgtgactcg ... actgttgcagGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCAC
EST: TCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAG GCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACEST: gi|164056426|gb|EL974424.1|EL974424
genomic: TCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGgtgtgactcg ... actgttgcagGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCAC
EST: TTGGATACATTAGATTCCTTCAGAGTCAAATTGAG GCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCAC
genomic: TTGGATACATTAGATTCCTTCAGAGTCAAATTGAGgtgtgactcg ... actgttgcagGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCAC
gatgtgattatatataaagtatttatgactttttgcaactgttgcactgttgcagGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT
gattgat putative branch site (score: 4)
attatatataaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagtataaagttttgttctctccatgttaagtaatatttgattgatgtgattatatataaagtatttatgactttttgcaactgttgcactgttgcagGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT
- - - - - -gttttgt
- - - - - - - - - tctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc