1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaaatttctggtgttcacaagttatttagtttgatccaagagctgtctaaaactgacttgtacgttgtaattttttgaagGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAG
species | Arabidopsis thaliana |
transcript | AT4G29000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTCGTGCTGGAGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAG GTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCEST: gi|116399763|gb|EG442355.1|EG442355
genomic: TCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGgtgaaatttc ... ttttttgaagGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTC
EST: TCTCGTGCTGGAGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAG GTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCEST: gi|125297935|gb|EL312020.1|EL312020
genomic: TCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGgtgaaatttc ... ttttttgaagGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTC
EST: CAAAGTTTGTATACAG GTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTC
genomic: CAAAGTTTGTATACAGgtgaaatttc ... ttttttgaagGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTC
ttagtttgatccaagagctgtctaaaactgacttgtacgttgtaattttttgaagGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAG
aactgac putative branch site (score: 2)
tttttt putative PPT
ttgtaattttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatttctggtgttcacaagttatttagtttgatccaagagctgtctaaaactgacttgtacgttgtaattttttgaagGTCCCTTTTAGCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG