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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagataacatgtgatgacagtaaattctggttgccttgttgaaaattttgaacaggttttctgaaacataagtgtgattagagtattagcctgtttaatctgtttggtagactactagatttcaaggggtgcatgaatttcataatgctgtcgaatggttctgttatgatagcttgttattatttaatactgcagGTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTCTACCCTGATAGCGTTGTTGGAACCGACTCCCACACAACCATGATTGATG

Basic information

species Arabidopsis thaliana
transcript AT4G26970.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380644|gb|EG423236.1|EG423236
EST:     CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAG                         GTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
genomic: CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAGgtacaagata ... aatactgcagGTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
EST: gi|116431683|gb|EG474275.1|EG474275
EST:     CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAG                         GTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
genomic: CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAGgtacaagata ... aatactgcagGTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
EST: gi|116431681|gb|EG474273.1|EG474273
EST:     CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAG                         GTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
genomic: CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAGgtacaagata ... aatactgcagGTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
EST: gi|116380645|gb|EG423237.1|EG423237
EST:     CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAG                         GTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
genomic: CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAGgtacaagata ... aatactgcagGTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTC
EST: gi|125018331|gb|EL090600.1|EL090600
EST:     CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAG                         GTCAACTTGGAATACCTTGGA
genomic: CCTTCCAAAACATGCTGGTCGTTCCTCCTGGGTCTGGGATTGTCCATCAGgtacaagata ... aatactgcagGTCAACTTGGAATACCTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataatgctgtcgaatggttctgttatgatagcttgttattatttaatactgcagGTCAACTTGGAATACCTTGGACGTGTTGTTTTCAACTCGAAAGGATTTCTCTACCCTGATAGCGTTGTTGGAACCGACTCCCACACAACCATGATTGATG
                                         atttaat  putative branch site (score: 4)
                            atagcttgttattatt  TA-rich tract