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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaagtttgattttgtcattaatattttgaatatgcgaactatatttgaaactaattgtttattccctcttacaaaaacctatagGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACAAG

Basic information

species Arabidopsis thaliana
transcript AT4G26260.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058164|gb|DR353921.1|DR353921
EST:     AGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTTGTTG                         GTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACA
genomic: AGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGgtaagtcaag ... aaacctatagGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACA
EST: gi|116471598|gb|EG514190.1|EG514190
EST:     AGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTTGTTG                         GTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACA
genomic: AGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGgtaagtcaag ... aaacctatagGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACA
EST: gi|116471597|gb|EG514189.1|EG514189
EST:     AGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTTGTTG                         GTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACA
genomic: AGTTATTACTCTTCCACAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGgtaagtcaag ... aaacctatagGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgcgaactatatttgaaactaattgtttattccctcttacaaaaacctatagGTGACACATTCCCTGTTGGATGTGCATTTGATGAATCTAACGTACATCACAAG
       aactatatttgaaact  TA-rich tract