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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagacaagctttaatctctaagagcatcttttaatcagtatgctgctactgccataaaataaaacaaacttgagttcttggcaccttttgttgtgtaattgttctctgttcttcttgccagTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATGGCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGA

Basic information

species Arabidopsis thaliana
transcript AT4G25870.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25870.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G149969_T02 (Zea mays), 3'ss of exon 6
gtaaagacaagctttaatctctaagagcatcttttaatcagtatgctgctactgccataaaataaaacaaacttgagttcttggcaccttttgttgtgtaattgttctctgttcttcttgccagTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATGGCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGA
                   | |||     | |||     | |    ||  | |     |   |   |   |||  |  |  ||  |  | |   |     |   |||  ||  | ||    ||||||||| |||||||||||||||| || ||  | ||||| || ||  ||||||| |||||||||||| |    || ||  | 
-----------------aatttaaagatttatttccccaaatgcattg--aatttttgaggtttgtatggactccaaatactgaaatgtctc--tacaataccattccttgaacatcg---cagTGGTTCTCAATGAAGCGACAACATGCAATGGTGGTGATTGCAGACAGTCTTTATTACTCAAAATTCAGGCTTTACTGCAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgagttcttggcaccttttgttgtgtaattgttctctgttcttcttgccagTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATGGCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGA
                                ttgttctctgttcttc  CT-rich tract
                             taattgtt  TA-rich tract