1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtttgattttctcgtctttattatatagcctttgttcacaaaattgggttttcacgaactttgcgctgatccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
species | Arabidopsis thaliana |
transcript | AT4G25070.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGTGAGEST: gi|116426422|gb|EG469014.1|EG469014
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426389|gb|EG468981.1|EG468981
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426396|gb|EG468988.1|EG468988
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426415|gb|EG469007.1|EG469007
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426404|gb|EG468996.1|EG468996
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGTAGCATTGCGTCAAAGAGAGEST: gi|116426393|gb|EG468985.1|EG468985
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426400|gb|EG468992.1|EG468992
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426413|gb|EG469005.1|EG469005
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426386|gb|EG468978.1|EG468978
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426401|gb|EG468993.1|EG468993
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426402|gb|EG468994.1|EG468994
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGTAGCATTGCGTCAAAGAGAGEST: gi|116426395|gb|EG468987.1|EG468987
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426388|gb|EG468980.1|EG468980
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426391|gb|EG468983.1|EG468983
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAGEST: gi|116426384|gb|EG468976.1|EG468976
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGTGAGEST: gi|116426407|gb|EG468999.1|EG468999
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
EST: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAG GAAAGAAGCAGCATTGCGTCAAAGAGAG
genomic: GTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGAGgtttgatttt ... atccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
tatagcctttgttcacaaaattgggttttcacgaactttgcgctgatccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
cgctgat putative branch site (score: 4)
tccctcc CT-rich tract
acaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgattttctcgtctttattatatagcctttgttcacaaaattgggttttcacgaactttgcgctgatccctccagGAAAGAAGCAGCATTGCGTCAAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA