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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaatacaattctcgttaagcttcataaatgttctattgtggatgaaatatccttatataccgtttgctttcaattgcaaaattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAA

Basic information

species Arabidopsis thaliana
transcript AT4G22740.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464066|gb|EG506658.1|EG506658
EST:     TGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAG                         ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
genomic: TGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaata ... aattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
EST: gi|116464062|gb|EG506654.1|EG506654
EST:     CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAG                         ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
genomic: CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaata ... aattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
EST: gi|86077542|gb|DR373299.1|DR373299
EST:     CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAG                         ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
genomic: CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaata ... aattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtggatgaaatatccttatataccgtttgctttcaattgcaaaattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAA
          aaatatccttatata  TA-rich tract