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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgactcaatttatgcctctcacttttagtttttgttatgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacagGTGAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGGTTTAGGATTGGCCAACAATCAGATCCAGTAGAGTTTATGTCGTGGCTCC

Basic information

species Arabidopsis thaliana
transcript AT4G22285.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22285.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA13G22190.1 (Glycine max), 3'ss of exon 5
gtctgactcaatttatgcctctcacttttagtttttgtta--tgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacagGTGAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGGTTTAGGATTGGCCAACAATCAGATCCAGTAGAGTTTATGTCGTGGCTCC
|| ||  ||   | || | |   |  |    || || | |  |    | |  || ||  ||| |  ||  || ||    | |    ||||||||| || ||||| || ||  | ||||| || ||||||||||| || ||| ||||| |||| ||   |||||| |||||||||||||| ||||| ||||| |
gtttgtttctgataattcattgtatataatattattataaattattataatttgatggtgacttgtct--ttcaatatgcat---gtcaacagGTCAGCCCACACGAGTTTCTACAAGCAGTGATGAAAGCCAGTAAAAAAAGGTTTCGGATAGGTGCACAATCTGATCCAGTAGAGTTCATGTCATGGCTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059785|gb|DR355542.1|DR355542
EST:     TTGGGGAACTAACTCGCAAGATTTGGCATGCTAGAAACTTTAAAGGACAG                         GTGAGTCCACATGAGTTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGC
genomic: TTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAgtctgactca ... gcatcaacagGTGAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacagGTGAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGGTTTAGGATTGGCCAACAATCAGATCCAGTAGAGTTTATGTCGTGGCTCC
                          cgctaat  putative branch site (score: 3)
                             taatttaagt  TA-rich tract