Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctatctctcctaattcgctttcacatatatcttcttccctttctgtgcatcatcatccttatccgtaacctttatccaaatttatagGGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGAATGACGGATCGACGTCCCTTGAAAACTCCATCTTTCCTCAAGGCCCTAT

Basic information

species Arabidopsis thaliana
transcript AT4G21810.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125325835|gb|EL339915.1|EL339915
EST:     AAGTAGCATGGGGGGATTTTCTG                         GGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGA
genomic: AAGT-GCATGGGGGGATTTTCTGgtacgctatc ... aaatttatagGGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGA
EST: gi|164220547|gb|ES135919.1|ES135919
EST:     AAGTGCATGGGGGGATTTTCTG                         GGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGA
genomic: AAGTGCATGGGGGGATTTTCTGgtacgctatc ... aaatttatagGGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttccctttctgtgcatcatcatccttatccgtaacctttatccaaatttatagGGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGAATGACGGATCGACGTCCCTTGAAAACTCCATCTTTCCTCAAGGCCCTAT
                              ccgtaac  putative branch site (score: 3)
                                      tttatccaaatttata  TA-rich tract