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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcttctttatttttcatcttttttttaccatctaactgttagaatcaagcaagtagagcaaactctttgaacttggatactgctaagtcctctgattcatggtgttttaaatttaaacaatgacagCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGACTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATG

Basic information

species Arabidopsis thaliana
transcript AT4G21160.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125022673|gb|EL094942.1|EL094942
EST:     CTAAAAAGATTGTTGATAGCTTTCGCACTAATTCATCATCGCAACAGCCG                         CAACTTGAAGGCATGGTTGAGTTTATTGG
genomic: CTAAAAAGATTGTTGATAGCTTTCGCACTAATTCATCATCGCAACAGCCGgtaaagcttc ... acaatgacagCAACTTGAAGGCATGGTTGAGTTTATTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggatactgctaagtcctctgattcatggtgttttaaatttaaacaatgacagCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGACTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATG
                  ctctgat  putative branch site (score: 4)
                               tgttttaaatttaaac  TA-rich tract