Sequence
atgc intronic sequence ATGC exonic sequencegtaagttacatcaagatttttttttcatctactcacatgtttctcgtggaatcatttgacacaatttcatctggtttttcttctctctagGGAGTTATCGCATCAGCACTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCTTCAACCCGCTG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G19185.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G19185.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 5
-----------gtaagttacatcaagatttttttttcatctactcacatgtttctcgtggaatcatttgacacaatttcatctggtttttcttctctctagGGAGTTATCGCATCAGCACTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCTTCAACCCGCTG
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agcacatggtttcatattgc-tgatggttttcattttgtggacattagaatcttactcaaaaggaaagaagattaaataaacctactctttgtctttgcagGGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAGATCTTGGGGCCTTCTTTGGTTGCTCTGTATAATCCACTTCAACCTGCGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86080009|gb|DR375766.1|DR375766EST: CATTGGATTGGAAGCTAACACAATCTGAGGTTCTTGCAGTTATATATGCA GGAGTTATCGCATCAGCACTAAACTATGGACTCTTGACTTGGTCCAATAAG
genomic: CATTGGATTGGAAGCTAACACAATCTGAGGTTCTTGCAGTTATATATGCAgtaagttaca ... ttctctctagGGAGTTATCGCATCAGCACTAAACTATGGACTCTTGACTTGGTCCAATAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgtttctcgtggaatcatttgacacaatttcatctggtttttcttctctctagGGAGTTATCGCATCAGCACTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCTTCAACCCGCTG
atttgac putative branch site (score: 4)
tttcatctggtttttc putative PPT
aatcattt TA-rich tract