1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtacctttttctttcctctctctttctctctatctcattctatcagtaacattaaaaatctaaagaagattggcaagacgcagactcgaaatcttcttgaatgtgtgattctgtattggttgattgtgaaaactgaggagaatgagttattgcagGTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGCAGATCAAGTCATTGA
species | Arabidopsis thaliana |
transcript | AT4G19006.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATGAAGAGCTTATCG GTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAAACAGTTTACGTEST: gi|19798356|gb|AU229809.1|AU229809
genomic: CATGAAGAGCTTATCGgtgagtacct ... gttattgcagGTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAA-CAGTTTACGT
EST: CTAAACTTTCAATCGAAGATGTTGAGCACCTTCTCATGAAGAGCTTATCG GTGCACTTGATAGAGGGAATACTAGATCAGGTGAATTGAACA-TTTACGTC
genomic: CTAAACTTTCAATCGAAGATGTTGAGCACCTTCTCATGAAGAGCTTATCGgtgagtacct ... gttattgcagGTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAACAGTTTACGTC
atgtgtgattctgtattggttgattgtgaaaactgaggagaatgagttattgcagGTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGCAGATCAAGTCATTGA
ggttgat putative branch site (score: 5)
agttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacctttttctttcctctctctttctctctatctcattctatcagtaacattaaaaatctaaagaagattggcaagacgcagactcgaaatcttcttgaatgtgtgattctgtattggttgattgtgaaaactgaggagaatgagttattgcagGTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGCAGATCAAGTCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA