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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtgaatttttctgaatggaatttcttaaaagctttgaactttagattctagctttgagaaatgactctgtttggatattggttataatgcagGGAGTCAGGTTCTTCGAGCCAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G18810.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124998232|gb|EL070501.1|EL070501
EST:     CAAAAATATAATCAG                         GGAGTCAGGTTCTTCGAGCCAGAG
genomic: CAAAAATATAATCAGgtcggtgaat ... tataatgcagGGAGTCAGGTTCTTCGAGCCAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttagattctagctttgagaaatgactctgtttggatattggttataatgcagGGAGTCAGGTTCTTCGAGCCAGAG
                                     atattggttataat  TA-rich tract