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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaccttagctctctacatctcaacattctgtaataacccattaaaagttctcaactccacatggaagaaagaataacattacacttaaactatactttcaatttttagATTCCTAGCTCCCATGAGAACACCGATACTTCCATTGATGCGATTCCGAAAACAAAGGGAGGGTTGATCGATTGGTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G17300.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458637|gb|EG501229.1|EG501229
EST:     CAGCTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTT                         ATTCCTAGCTCCCATGAGAACACCGATACTTCCATTGATGCGATTCCGAAA
genomic: CAGCTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTTgtaaggacct ... caatttttagATTCCTAGCTCCCATGAGAACACCGATACTTCCATTGATGCGATTCCGAAA
EST: gi|116458629|gb|EG501221.1|EG501221
EST:     CAGCTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTT                         ATTCCTAGCTCCCATGAGAGCACCGATACTTCCATTGATGCGATTCCGAAA
genomic: CAGCTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTTgtaaggacct ... caatttttagATTCCTAGCTCCCATGAGAACACCGATACTTCCATTGATGCGATTCCGAAA
EST: gi|116458626|gb|EG501218.1|EG501218
EST:     CAGCTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTT                         ATTCCTAGCTCCCATGAGAGCACCGATACTTCCATTGATGCGATTCCGAAA
genomic: CAGCTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTTgtaaggacct ... caatttttagATTCCTAGCTCCCATGAGAACACCGATACTTCCATTGATGCGATTCCGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actccacatggaagaaagaataacattacacttaaactatactttcaatttttagATTCCTAGCTCCCATGAGAACACCGATACTTCCATTGATGCGATTCCGAAAACAAAGGGAGGGTTGATCGATTGGTCTCAG
                 gaataac  putative branch site (score: 2)
                                       tactttc  putative PPT
                               ttaaactatactttca  TA-rich tract