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gtatgtaccgggaaaagtttccagtattttttttttgttcaatttttcttgcttgggtattgctttcttaaactttctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATATAACTGTTGGTGATATCGGGACAAAGATGGGAAATGGAGCATATAATTC
species | Arabidopsis thaliana |
transcript | AT4G16760.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTTACGGTATCCATG GATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATAEST: gi|116424738|gb|EG467330.1|EG467330
genomic: TTGTTTACGCTCGTCTCATAACTAACGGAAAAGAC-TACGGTATCCATGgtatgtaccg ... tctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATA
EST: TGTTGTTTACGCTCGCCTCATAACTAACGGAAAAGACTACGGTATCCATG GATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATAEST: gi|125205401|gb|EL220355.1|EL220355
genomic: TGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATGgtatgtaccg ... tctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATA
EST: TGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATG GATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTEST: gi|116424736|gb|EG467328.1|EG467328
genomic: TGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATGgtatgtaccg ... tctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATT
EST: TGTTGTTTACGCTCGCCTCATAACTAACGGAAAAGACTACGGTATCCATG GATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATA
genomic: TGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATGgtatgtaccg ... tctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATA
ttttttgttcaatttttcttgcttgggtattgctttcttaaactttctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATATAACTGTTGGTGATATCGGGACAAAGATGGGAAATGGAGCATATAATTC
ctttcttaaactttct CT-rich tract
ttcaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaccgggaaaagtttccagtattttttttttgttcaatttttcttgcttgggtattgctttcttaaactttctcttccagGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATATAACTGTTGGTGATATCGGGACAAAGATGGGAAATGGAGCATATAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA